talk
The Cell Metabolism cover image that accompanies the article illustrates how the T2DKP integrates multiple types of genetic and genomic data to provide insights that can be the building blocks for new therapeutics.
  1. Costanzo, Maria C, Carolina Roselli, MacKenzie Brandes, Marc Duby, Quy Hoang, Dongkeun Jang, Ryan Koesterer, Parul Kudtarkar, Annie Moriondo, and Trang Nguyen. "Cardiovascular Disease Knowledge Portal: A Community Resource for Cardiovascular Disease Research." Circulation: Genomic and Precision Medicine (2023).
  2. Costanzo, Maria C, Marcin von Grotthuss, Jeffrey Massung, Dongkeun Jang, Lizz Caulkins, Ryan Koesterer, Clint Gilbert, Ryan P Welch, Parul Kudtarkar, and Quy Hoang. "The Type 2 Diabetes Knowledge Portal: An open access genetic resource dedicated to type 2 diabetes and related traits." Cell metabolism (2023).
  3. Kudtarkar, Parul, Maria Costanzo, Ying Sun, Dongkeun Jang, Ryan Koesterer, Josyf C Mychaleckyj, Uma Nayak, Suna Onengut-Gumuscu, Stephen S Rich, and Jason A Flannick. "Leveraging type 1 diabetes human genetic and genomic data in the T1D Knowledge Portal." PLoS Biology (2023).
  4. Elgamal, Ruth, Parul Kudtarkar, Rebecca Melton, Hannah Mummey, Paola Benaglio, Mei-Lin Okino, and Kyle J Gaulton. "An integrated map of cell type-specific gene expression in pancreatic islets." Diabetes (2023).
  5. Chiou, Joshua, Chun Zeng, Zhang Cheng, Jee Yun Han, Michael Schlichting, Serina Huang, Kudtarkar Parul, Jinzhao Wang, Yinghui Sui, Allison Deogaygay, and Mei-Lin Okino. "Single-cell chromatin accessibility identifies pancreatic islet cell type– and state-specific regulatory programs of diabetes risk.." Nature Genetics (2021).
  6. Wang, Allen, Joshua Chiou, Olivier B Poirion, Justin Buchanan, Michael J Valdez, Jamie M Verheyden, Xiaomeng Hou, Parul Kudtarkar, Sharvari Narendra, and Jacklyn M Newsome. "Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes." Elife (2020).
  7. Wang, Lijun, Kari Koppitch, Ann Cutting, Ping Dong, Parul Kudtarkar, Jenny Zeng, R Andrew Cameron, and Eric H Davidson. "Developmental effector gene regulation: Multiplexed strategies for functional analysis." Developmental biology (2019).
  8. Kudtarkar, Parul and R. Andrew Cameron. "Echinobase: an expanding resource for echinoderm genomic information." Database: The Journal of Biological Databases and Curation (2017).
  9. Cameron, R Andrew, Parul Kudtarkar, Susan M Gordon, Kim C Worley, and Richard A Gibbs. "Do echinoderm genomes measure up?." Marine genomics (2015).
  10. Wall, Dennis P, Parul Kudtarkar, Vincent A Fusaro, Rimma Pivovarov, Prasad Patil, and Peter J Tonellato. "Cloud computing for comparative genomics." BMC bioinformatics (2010).
  11. Kudtarkar, Parul, Todd F DeLuca, Vincent A Fusaro, Peter J Tonellato, and Dennis P Wall. "Cost-effective cloud computing: a case study using the comparative genomics tool, roundup." Evolutionary Bioinformatics (2010).

Invited Talks

Poster Presentations

  • C Franco, M Sweredoski, P Kudtarkar, R Cameron, S Hess. Proteomics approach to study neuronal regeneration events of the sequenced sea star Patiria miniate. The FASEB Journal 28 153.7 (2014)
  • Y. Sun, P Kudtarkar, S. Morabito, K Gaulton. Type 2 diabetes epigenome data repository and resource. American Society of Human Genetics Annual Meeting (2017)
  • Costanzo MC, Kudtarkar P, Sun Y, Jang D, Koesterer R, Mychaleckyj J, Nayak U, Onengut-Gumuscu S, Rich SS, Flannick J, Gaulton KJ, Burtt NP. The Type 1 Diabetes Knowledge Portal: An Open-Access Resource for Insights into the Genetic and Genomic Basis of Type 1 Diabetes. American Diabetes Association (2022)
  • Ahmed T., Bhowmick M., Maheshwari M., Sheikh S., Kudtarkar P., Infusion Controller, Proceedings of International Conference on Biological and Medical Physics (2005)