talk
The Cell Metabolism cover image that accompanies the article illustrates how the T2DKP integrates multiple types of genetic and genomic data to provide insights that can be the building blocks for new therapeutics.
  1. Qadir, Mirza Muhammad Fahd, Ruth M Elgamal, Keijing Song, and Parul Kudtarkar. "Single cell regulatory architecture of human pancreatic islets suggests sex differences in β cell function and the pathogenesis of type 2 diabetes." bioRxiv (2024).
  2. Costanzo, Maria C, Carolina Roselli, MacKenzie Brandes, and Parul Kudtarkar. "Cardiovascular disease knowledge portal: a community resource for cardiovascular disease research." Circulation: Genomic and Precision Medicine (2023).
  3. Costanzo, Maria C, Marcin von Grotthuss, Jeffrey Massung, and Parul Kudtarkar. "The Type 2 Diabetes Knowledge Portal: An open access genetic resource dedicated to type 2 diabetes and related traits." Cell metabolism (2023).
  4. Kudtarkar, Parul, Maria Costanzo, and Ying Sun. "Leveraging type 1 diabetes human genetic and genomic data in the T1D Knowledge Portal." PLoS Biology (2023).
  5. Elgamal, Ruth, Parul Kudtarkar, and Rebecca Melton. "An integrated map of cell type-specific gene expression in pancreatic islets." Diabetes (2023).
  6. Chiou, Joshua, Chun Zeng, Zhang Cheng, and Parul Kudtarkar. "Single-cell chromatin accessibility identifies pancreatic islet cell type– and state-specific regulatory programs of diabetes risk.." Nature Genetics (2021).
  7. Wang, Allen, Joshua Chiou, Olivier B Poirion, and Parul Kudtarkar. "Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes." Elife (2020).
  8. Wang, Lijun, Kari Koppitch, Ann Cutting, and Parul Kudtarkar. "Developmental effector gene regulation: Multiplexed strategies for functional analysis." Developmental biology (2019).
  9. Kudtarkar, Parul and R. Andrew Cameron. "Echinobase: an expanding resource for echinoderm genomic information." Database: The Journal of Biological Databases and Curation (2017).
  10. Cameron, R Andrew, Parul Kudtarkar, and Susan M Gordon. "Do echinoderm genomes measure up?." Marine genomics (2015).
  11. Wall, Dennis P, Parul Kudtarkar, and Vincent A Fusaro. "Cloud computing for comparative genomics." BMC bioinformatics (2010).
  12. Kudtarkar, Parul, Todd F DeLuca, and Vincent A Fusaro. "Cost-effective cloud computing: a case study using the comparative genomics tool, roundup." Evolutionary Bioinformatics (2010).

Invited Talks

  • Kudtarkar, Parul , K. Gaulton. Single Cell Maps and Analysis Tools in CMDGA. Accelerating Medicines Partnership Common Metabolic Diseases Parliament Meeting (2024)
  • Kudtarkar, Parul , A. Moriondo. Gene Expression integration and representation in the CMDGA/KP. Accelerating Medicines Partnership Common Metabolic Diseases Parliament Meeting (2023)
  • N. Burtt, M. Miller, S. Grant, M. Costanzo, Kudtarkar, Parul . Accelerating Medicines Partnership Common Metabolic Diseases® (AMP-CMD) Ancillary Event (2022)
  • Kudtarkar, Parul . Representing genomic perturbation studies in CMDGA. Accelerating Medicines Partnership Common Metabolic Diseases – Leadership Conference (2022)
  • Kudtarkar, Parul . Introducing the Common Metabolic Diseases Genome Atlas. Accelerating Medicine Partnership T2DKP Webinar Series (2021)
  • N. Burtt, M. Costanzo, K. Gaulton, Kudtarkar, Parul . Diabetes Epigenome Atlas (DGA) and T2D Knowledge Portal: connected and complementary resources for research on the genomics and genetic basis of T2D. Accelerating Medicine Partnership T2DKP Webinar Series (2019)

Poster Presentations

  • Costanzo MC, Kudtarkar, Parul , Sun Y, Jang D, Koesterer R, Mychaleckyj J, Nayak U, Onengut-Gumuscu S, Rich SS, Flannick J, Gaulton KJ, Burtt NP. The Type 1 Diabetes Knowledge Portal: An Open-Access Resource for Insights into the Genetic and Genomic Basis of Type 1 Diabetes. American Diabetes Association (2022)
  • Y. Sun, Kudtarkar, Parul , S. Morabito, K Gaulton. Type 2 diabetes epigenome data repository and resource. American Society of Human Genetics Annual Meeting (2017)
  • C Franco, M Sweredoski, Kudtarkar, Parul , R Cameron, S Hess. Proteomics approach to study neuronal regeneration events of the sequenced sea star Patiria miniate. The FASEB Journal 28 153.7 (2014)
  • Ahmed T., Bhowmick M., Maheshwari M., Sheikh S., Kudtarkar, Parul , Infusion Controller, Proceedings of International Conference on Biological and Medical Physics (2005)